User Guides
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Quickstart
10-minute tutorial on the GenePattern Notebook Environment
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Basic Features
Most commonly used features
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Publish and Share Notebooks
How to share or publish notebooks
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Best Practices
10 simple rules for reproducible research in GenePattern Notebook
- Cheat Sheet
- Videos and Presentations
Technical Documentation
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Programmatic Features
Features for notebook authors and developers
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Local Installation
How to install GenePattern Notebook locally
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Jupyter Users
Additional information for Jupyter users
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Integration Guide
Integrate GenePattern Notebook into a shared Jupyter environment
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Release Notes
Latest updates on GenePattern Notebook and its various extensions
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Packages, Kernels, and Extensions
Currently available on the GenePattern Notebook server
- FAQ
GenePattern Documentation
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GenePattern Concepts
Brief introduction to the concepts and terms used in GenePattern and its documentation
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GenePattern Analysis Modules
Available GenePattern modules
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File Formats Guide
File formats used by GenePattern modules
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Programmers Guide
Developing GenePattern modules and accessing GenePattern programmatically
- GenePattern Videos